Kikugawa, Gota, Apostolov, Rossen, Kamiya, Narutoshi, Taiji, Makoto, Himeno, Ryutaro, Nakamura, Haruki, Yonezawa, Yasushige (2009) Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems. Journal of Computational Chemistry, 30 (1). 110-118 doi:10.1002/jcc.21035

See Also

These are possibly similar items as determined by title/reference text matching only.

	Ikebe, Jinzen, Umezawa, Koji, Kamiya, Narutoshi, Sugihara, Takanori, Yonezawa, Yasushige, Takano, Yu, Nakamura, Haruki, Higo, Junichi (2011) Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. Journal of Computational Chemistry, 32 (7). 1286-1297 doi:10.1002/jcc.21710
	Higo, Junichi, Kamiya, Narutoshi, Sugihara, Takanori, Yonezawa, Yasushige, Nakamura, Haruki (2009) Verifying trivial parallelization of multicanonical molecular dynamics for conformational sampling of a polypeptide in explicit water. Chemical Physics Letters, 473. 326-329 doi:10.1016/j.cplett.2009.03.077
	Fukuda, Ikuo, Kamiya, Narutoshi, Yonezawa, Yasushige, Nakamura, Haruki (2012) Simple and accurate scheme to compute electrostatic interaction: Zero-dipole summation technique for molecular system and application to bulk water. The Journal of Chemical Physics, 137 (5). 54314pp. doi:10.1063/1.4739789
	Kamiya, Narutoshi, Fukuda, Ikuo, Nakamura, Haruki (2013) Application of zero-dipole summation method to molecular dynamics simulations of a membrane protein system. Chemical Physics Letters, 568. 26-32 doi:10.1016/j.cplett.2013.03.014
	Takano, Yu, Nakata, Kazuto, Yonezawa, Yasushige, Nakamura, Haruki (2016) Development of massive multilevel molecular dynamics simulation program, platypus (PLATform for dYnamic protein unified simulation), for the elucidation of protein functions. Journal of Computational Chemistry, 37 (12). 1125-1132 doi:10.1002/jcc.24318
	Ohmura, Itta, Morimoto, Gentaro, Ohno, Yousuke, Hasegawa, Aki, Taiji, Makoto (2014) MDGRAPE-4: a special-purpose computer system for molecular dynamics simulations. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 372 (2021) 20130387 doi:10.1098/rsta.2013.0387
	Narumi, Tetsu, Yasuoka, Kenji, Taiji, Makoto, Höfinger, Siegfried (2009) Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. Journal of Computational Chemistry, 30 (14). 2351-2357 doi:10.1002/jcc.21257
	Yonezawa, Yasushige (2016) A method for predicting protein conformational pathways by using molecular dynamics simulations guided by difference distance matrices. Journal of Computational Chemistry, 37 (13). 1139-1146 doi:10.1002/jcc.24296
	Yonezawa, Yasushige, Shimoyama, Hiromitsu, Nakamura, Haruki (2011) Multicanonical molecular dynamics simulations combined with Metadynamics for the free energy landscape of a biomolecular system with high energy barriers. Chemical Physics Letters, 501. 598-602 doi:10.1016/j.cplett.2010.11.061
	Fukuda, Ikuo, Kamiya, Narutoshi, Nakamura, Haruki (2014) The zero-multipole summation method for estimating electrostatic interactions in molecular dynamics: Analysis of the accuracy and application to liquid systems. The Journal of Chemical Physics, 140 (19). 194307pp. doi:10.1063/1.4875693
	Shimoyama, Hiromitsu, Nakamura, Haruki, Yonezawa, Yasushige (2011) Simple and effective application of the Wang–Landau method for multicanonical molecular dynamics simulation. The Journal of Chemical Physics, 134 (2). 24109pp. doi:10.1063/1.3517105