Vaca Jacome, Alvaro Sebastian, Peckner, Ryan, Shulman, Nicholas, Krug, Karsten, DeRuff, Katherine C., Officer, Adam, Christianson, Karen E., MacLean, Brendan, MacCoss, Michael J., Carr, Steven A., Jaffe, Jacob D. (2020) Avant-garde: an automated data-driven DIA data curation tool. Nature Methods, 17 (12) 1237-1244 doi:10.1038/s41592-020-00986-4

See Also

These are possibly similar items as determined by title/reference text matching only.

	Dele-Oni, Deborah O., Christianson, Karen E., Egri, Shawn B., Vaca Jacome, Alvaro Sebastian, DeRuff, Katherine C., Mullahoo, James, Sharma, Vagisha, Davison, Desiree, Ko, Tak, Bula, Michael, Blanchard, Joel, Young, Jennie Z., Litichevskiy, Lev, Lu, Xiaodong, Lam, Daniel, Asiedu, Jacob K., Toder, Caidin, Officer, Adam, Peckner, Ryan, MacCoss, Michael J., Tsai, Li-Huei, Carr, Steven A., Papanastasiou, Malvina, Jaffe, Jacob D. (2021) Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds. Scientific Data, 8 (1) doi:10.1038/s41597-021-01008-4
	Peckner, Ryan, Myers, Samuel A, Jacome, Alvaro Sebastian Vaca, Egertson, Jarrett D, Abelin, Jennifer G, MacCoss, Michael J, Carr, Steven A, Jaffe, Jacob D (2018) Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. Nature Methods, 15 (5). 371-378 doi:10.1038/nmeth.4643
	Mani, D. R., Maynard, Myranda, Kothadia, Ramani, Krug, Karsten, Christianson, Karen E., Heiman, David, Clauser, Karl R., Birger, Chet, Getz, Gad, Carr, Steven A. (2021) PANOPLY: a cloud-based platform for automated and reproducible proteogenomic data analysis. Nature Methods, 18 (6) 580-582 doi:10.1038/s41592-021-01176-6
	Egertson, Jarrett D, Kuehn, Andreas, Merrihew, Gennifer E, Bateman, Nicholas W, MacLean, Brendan X, Ting, Ying S, Canterbury, Jesse D, Marsh, Donald M, Kellmann, Markus, Zabrouskov, Vlad, Wu, Christine C, MacCoss, Michael J (2013) Multiplexed MS/MS for improved data-independent acquisition. Nature Methods, 10 (8). 744-746 doi:10.1038/nmeth.2528
	Eisenstein, Michael (2020) Smart solutions for automated imaging. Nature Methods, 17 (11) 1075-1079 doi:10.1038/s41592-020-00988-2
	Baker, Erin S., Hoang, Corey, Uritboonthai, Winnie, Heyman, Heino M., Pratt, Brian, MacCoss, Michael, MacLean, Brendan, Plumb, Robert, Aisporna, Aries, Siuzdak, Gary (2023) METLIN-CCS: an ion mobility spectrometry collision cross section database. Nature Methods, 20 (12) 1836-1837 doi:10.1038/s41592-023-02078-5
	Tang, Lin (2020) FAIR your data. Nature Methods, 17 (2). 127 doi:10.1038/s41592-020-0742-y
	Stergachis, Andrew B, MacLean, Brendan, Lee, Kristen, Stamatoyannopoulos, John A, MacCoss, Michael J (2011) Rapid empirical discovery of optimal peptides for targeted proteomics. Nature Methods, 8 (12). 1041-1043 doi:10.1038/nmeth.1770
	Myers, Samuel A., Wright, Jason, Peckner, Ryan, Kalish, Brian T., Zhang, Feng, Carr, Steven A. (2018) Discovery of proteins associated with a predefined genomic locus via dCas9–APEX-mediated proximity labeling. Nature Methods, 15 (6). 437-439 doi:10.1038/s41592-018-0007-1
	Tang, Lin (2020) High-dimensional data visualization. Nature Methods, 17 (2). 129 doi:10.1038/s41592-020-0750-y
	Strack, Rita (2020) Fast analysis of single-molecule data. Nature Methods, 17 (6) 564 doi:10.1038/s41592-020-0877-x